关于数字PCR的报告方昊

上传人:仙*** 文档编号:171378805 上传时间:2022-11-26 格式:PPT 页数:22 大小:3.25MB
返回 下载 相关 举报
关于数字PCR的报告方昊_第1页
第1页 / 共22页
关于数字PCR的报告方昊_第2页
第2页 / 共22页
关于数字PCR的报告方昊_第3页
第3页 / 共22页
点击查看更多>>
资源描述
12数字数字 PCR(digital PCR(digital PCR,dPCRPCR,dPCR)技术是近年技术是近年来迅速发展起来的一种定量分析技术。与传统来迅速发展起来的一种定量分析技术。与传统定量定量 PCR PCR 技术不同的是数字技术不同的是数字 PCR PCR 不依赖于扩不依赖于扩增曲线的循环阈值增曲线的循环阈值(CT(CT值值)进行定量,不受扩增进行定量,不受扩增效率的影响,也不必采用看家基因和标准曲线效率的影响,也不必采用看家基因和标准曲线,是是对起始样的绝对定量。对起始样的绝对定量。3主 要 内 容数字数字 PCR 的发展与原理的发展与原理数字数字 PCR 的应用的应用312数字数字 PCR 的前景展望的前景展望420 20 世纪末,世纪末,Vogelstein Vogelstein 等提出数字等提出数字 PCRPCR 的概念,通的概念,通过将一个样本稀释后分成几十到几万份甚至上千万份,然过将一个样本稀释后分成几十到几万份甚至上千万份,然后分配到不同的反应单元,每个单元不包含或包含一个或后分配到不同的反应单元,每个单元不包含或包含一个或多个拷贝的目标分子多个拷贝的目标分子(DNA(DNA 模板模板),在每个反应单元中分,在每个反应单元中分别对目标分子进行别对目标分子进行 PCR PCR 扩增,扩增结束后对各个反应单扩增,扩增结束后对各个反应单元的荧光信号进行统计学分析。元的荧光信号进行统计学分析。【1】56传统 PCR 或定量 PCR 反应都是在 96/384 孔板中进行的,因此早期的数字 PCR 技术也采用 96/384孔板作为反应单元。这远远不能满足数字 PCR对反应单元数的需求,于是开始制造微升和纳升级别的反应室,在提高灵敏度的同时减少了反应体系的总体积。1.微反应室/孔板数字 PCR72.微流控数字 PCR随着微流芯片技术的发展,数字 PCR 借助微流芯片,可以把样本准确并且快速的分成若干个独立的反应单元,各个单元之间互不影响,可以多步反应同时进行。提高反应通量的同时也降低了反应消耗成本。83.微滴数字 PCR微滴数字 PCR 借鉴了乳液 PCR,即将 DNA 模板与连接引物的磁性微球以极低的浓度(比如单拷贝)包裹于油水两相形成的纳升至皮升级液滴中进行 PCR 扩增,扩增后的产物富集在磁性微球上,收集破乳后进行测序。通过油水两相间隔得到的以液滴为单位的 PCR 反应体系,比微孔板和 IFC 系统更容易实现小体积和高通量,而且系统简单,成本低,因此成为理想的数字 PCR 技术平台。【2】91011 成本高成本高 通量低通量低 对引物有要求对引物有要求 DNA 聚合酶质量要求高聚合酶质量要求高 严控污染严控污染121林彩琴,姚波.数字PCR技术进展J.化学进展,2012,(12):2 415-2423.2詹成,燕丽,王琳,金玉麟,陈力,时雨,王群.数字PCR技术的发展和应用J.复旦学报(医学版),2015,(06):786-789.3Holmberg RC,Gindlesperger A,Stokes T,et al.Akonni TruTip(R)and Qiagen(R)methods for extraction of fetal circulating DNA-evaluation by real-time and digital PCR.PLoS One,2013,8:e73068.4Gu W,Koh W,Blumenfeld YJ,et al.Noninvasive prenatal diag-nosis in a fetus at risk for methylmalonic academia.Genetics inMedicine,2014,16(7):564-567.5Pornprasert S,Prasing W.Detection of alpha(0)-thalassemia South-East Asian-type deletion by droplet digital PCR.Euro-pean Journal of Haematology,2014,92:244-248.136Podlesniy P,Figueiro-Silva J,Llado A,et al.L ow cerebrospinalfluid concentration ofmitochondrial DNA in preclinical Alzheimerdisease.Annals of Neurology,2013,74:655-668.7Gevensleben H,Garcia-Murillas I,Graeser MK,et al.Noninvasivedetection of HER2amplification with plasma DNA digital PCR.Clinical Cancer Research,2013,19:3276-3284.8Beaver JA,Jelovac D,Balukrishna S,et al.Detection of cancerDNA in plasma of early stagebreast cancer patients.ClinicalCancer Research,2014,20(10):2643-2650.9Ma J,Li N,Guarnera M,Jiang F.Quantification of plasma miRNAsby digital PCR for cancer diagnosis.Biomark Insights,2013,8:127-136.1410Persaud D,Gay H,Ziemniak C,et al.Absence of detectableHIV-1viremiaaftertreatmentcessation in an infant.New EnglandJournal of Medicine,2013,369:1828-1835.11Aubert M,Boyle NM,Stone D,et al.In vitro inactivation oflatent HSV by targeted mutagenesis using an HSV-specific homingendonuclease,Molecular Therapy-Nucleic Acids,2014,3:e146.12Abyzov A,Mariani J,Palejev D,et al.Somatic copy numbermosaicism in human skin revealed by induced pluripotent stemcells.Nature,2012,492:438-442.13Boettger LM,Handsaker RE,Zody MC,et al.Structural haplotypesand recent evolution of the human 17q21.31 region.NatureGenetics,2012,44:881-885.1514Hindson BJ,Ness KD,Masquelier DA,et al.High-throughput drop-let digital PCR system for absolute quantitation of DNA copynumber.Analytical Chemistry,2011,83:8604-8610.15Shlush LI,Zandi S,Mitchell A,et al.Identification of pre-leukaemic haematopoietic stem cells in acute leukaemia.Nature,2014,506:328-333.16Johnson BE,Mazor T,Hong C,et al.Mutational analysis revealsthe origin and therapy-driven evolution of recurrent glioma.Science,2014,343(6167):189-193.17Miyaoka Y,Chan AH,Judge LM,et al.Isolation of single-basegenome-edited human iPS cells without antibiotic selection.Nature Methods,2014,11:291-293.1618Abdel-Wahab O,Klimek VM,Gaskell A,et al.Efficacy of inter-mittent combined RAF and MEK inhibition in a patient withconcurrent BRAF and NRAS mutant malignancies.Cancer discovery,2014,4(5):538-45.19Nair VD,Ge Y,Balasubramaniyan N,et al.Involvement of his-tone demethylase LSD1 in short-time-scale gene expressionchanges during cell cycle progression in embryonic stem cells.Molecular and Cellular Biology,2012,32:4861-4876.20Gorbachev AY,Fisunov GY,Izraelson M,et al.DNA repair in My-coplasma gallisepticum.BMC Genomics,2013,14:726.21Jiang K,Ren C,Nair VD.MicroRNA-137 represses Klf4 and Tbx3during differentiation of mouse embryonic stem cells.Stem CellResearch,2013,11:1299-1313.1722Guo G,Huss M,Tong G Q,et al.Resolution of cell fate deci-sions revealed by single-cell gene expression analysis fromzygote to blastocyst.Developmental Cell,2011,18(4):675-685.23White A K,Michael V,Oleh I P,et al.High-throughputmicrofluidic single-cell RT-qPCR.Proc Natl Acad Sci USA,2011,108(34):13999-14004.24Cangi MG,Biavasco R,Cavalli G,et al.BRAFV600E-mutation isinvariably present and associated to oncogene-induced senes-cence in Erdheim-Chester disease.Annals of the Rheumatic,2014,doi:10.1136/annrheumdis-2013-204924.25Chong IY,Cunningham D,Barber LJ,et al.The genomic land-scape of oesophagogastric junctional adenocarcinoma,Journalof Pathology,2013,231:301-310.1826Fresard L,Leroux S,Servin B,et al.Transcriptome-wide in-vestigation of genomic imprinting in chicken.Nucleic AcidsResearch,2014,42(6):3768-3782.27Wang IX,Core LJ,Kwak H,et al.RNA-DNA differences are gen-erated in human cells within seconds after RNA exits poly-merase II.Cell reports,2014,6:906-915.28Chen R,Mias GI,Li-Pook-Than J,et al.Personal omics pro-filing reveals dynamic molecular and medical phenotypes.Cell,2012,148:1293-1307.29Laurie MT,Bertout JA,Taylor SD,et al.Simultaneous digitalquantification and fluorescence-based size characterizationof massively parallel sequencing libraries.Biotechniques,2013,55:61-67.1930White RA,Grassa CJ,Suttle CA.Draft genome sequence ofExiguobacterium pavilionensis strain RW-2,with wide thermal,salinity,and pH tolerance,isolated from modern freshwater microbialites.Genome Announcements,2013,1(4):e00597-13.31Morisset D,Stebih D,Milavec M,et al.Quantitative analysis offood and feed samples with droplet digital PCR.PLoS One,2013,8:e62583.32Philippe C,Somanath B,Lina P,et al.Absolute quantificationof genetically modified MON810 maize(Zea mays L.)by digitalpolymerase chain reaction.Analytical and Bioanalytical Chemistry,2010,396:2143-2150.33Burns MJ,Burrell AM,.Foy CA.The applicability of digitalPCR for the assessment of detection limits in GMO analysis.European Food Research and Technology,2010,20 231:353-362.34Racki N,Morisset D,Gutierrez-Aguirre I,et al.One-step RT-droplet digital PCR:a breakthrough in the quantification ofwaterborne RNA viruses.Analytical and Bioanalytical Chemistry,2014,406:661-667.35Rothrock MJ,Hiett KL,Kiepper BH,et al.Quantification ofzoonotic bacterial pathogens within commercial poultry pro-cessing water samples using droplet digital PCR.Advances in Applied Microbiology,2013,3:403-411.36Zhao H,Wilkins K,Damon IK,et al.Specific qPCR assays for thedetection of Orf virus,Pseudocowpox virus and Bovine Papular Sto-matitis virus.Journal of Virological Methods,2013,194:229-234.2137Kelley K,Cosman A,Belgrader P,et al.Detection of methicil-lin-resistant Staphylococcus aureus by a duplex droplet digitalPCR assay.Journal of Clinical Microbiology,2013,51:2033-2039.22
展开阅读全文
相关资源
相关搜索

最新文档


当前位置:首页 > 管理文书 > 施工组织


copyright@ 2023-2025  zhuangpeitu.com 装配图网版权所有   联系电话:18123376007

备案号:ICP2024067431-1 川公网安备51140202000466号


本站为文档C2C交易模式,即用户上传的文档直接被用户下载,本站只是中间服务平台,本站所有文档下载所得的收益归上传人(含作者)所有。装配图网仅提供信息存储空间,仅对用户上传内容的表现方式做保护处理,对上载内容本身不做任何修改或编辑。若文档所含内容侵犯了您的版权或隐私,请立即通知装配图网,我们立即给予删除!